PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART06G24090.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YC
Protein Properties Length: 250aa    MW: 27740.1 Da    PI: 4.5964
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART06G24090.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC175.55.2e-55791821101
            NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 
                      ql++fw+++   ie++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa+trtd++df
  OBART06G24090.1  79 QLQQFWAERladIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEIFILELTLRSWMHTEENKRRTLQKNDIAAAITRTDMYDF 172
                      89*****98888********************************************************************************** PP

            NF-YC  92 lvdivprdel 101
                      lvdivprd+l
  OBART06G24090.1 173 LVDIVPRDDL 182
                      ********87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471139.56E-3642173IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.9E-3793165IPR009072Histone-fold
PfamPF008085.0E-21101164IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MEPSSQPQPA IGVVAGGSQV YPAYPPAATV STAPAVIPAG SQPAPSFPAN PDQLSAQHQL  60
VYQQAQQFHQ QLQQQQQRQL QQFWAERLAD IEQTTDFKNH SLPLARIKKI MKADEDVRMI  120
SAEAPVIFAK ACEIFILELT LRSWMHTEEN KRRTLQKNDI AAAITRTDMY DFLVDIVPRD  180
DLKEEGVGLP RAGLPPLGVP ADSYPYGYYV PQQQVPGAGI AYGGQQGHPG YLWQDPQEQQ  240
EEPPAEQQSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C2e-42691798119HapE
4g92_C2e-42691798119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151157RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644345.11e-180PREDICTED: nuclear transcription factor Y subunit C-2
SwissprotQ8LCG75e-69NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBLA0A0D3GJP70.0A0A0D3GJP7_9ORYZ; Uncharacterized protein
STRINGORGLA06G0202500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27033790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.21e-66nuclear factor Y, subunit C2